The Program for Applied Research and Development in Genomic Medicine (PARADIGM) At the university of florida

The postdoctoral training program, PARADIGM, helps train clinicians and researchers who are poised to lead the next generation of scientists into an era where genomic medicine approaches are a routine part of patient care.

Francis Collins, M.d., Ph.D., Former Director of the National Institutes of Health

Decoding the Human Genome

"Decoding the human genome sequence is the most significant undertaking that we have mounted so far in an organized way in all of science. I believe that reading our blueprints, cataloguing our own instruction book, will be judged by history as more significant than even splitting the atom or going to the moon."

Dr. Cavallari and student

PROGRAM SUMMARY AND TRAINEE BENEFITS

The Program for Applied Research and Development in Genomic Medicine, or PARADIGM, is funded by the National Institutes of Health’s National Human Genomic Research Institute and will prepare trainees to be leaders in genomic medicine research and implementation. Trainees will receive didactic training tailored to their needs, extensive mentoring from world-renowned scientists, valuable clinical exposure in multiple areas of genomic medicine and stimulating career development opportunities in a robust, interdisciplinary research environment at UF.

The following are among the many trainee benefits of the program:

  • Train in a rich research environment at the University of Florida.
  • Gain in-depth knowledge in genomic medicine and research practices through a comprehensive didactic program that includes courses in genomic medicine, grant writing, biostatistics and more.
  • Establish a primary research project that will support development of manuscripts, grant applications and presentations at UF and national meetings.
  • Earn a graduate certificate in precision medicine to enhance training.
  • Access to interdisciplinary learning opportunities at the University of Florida.
  • Guidance from a primary mentor and mentoring committee who will support the trainee through the program.
  • Spend at least 32 hours in a clinical genomic medicine setting to support implementation and broaden perspectives of the field.
  • Substantial professional development training through exposure to several genomic medicine career pathways, seminar series events, annual UF research days and attendance at national and international meetings.

PROGRAM FACTS

Areas of Research Genomic medicine with an emphasis in: • Pharmacogenomics • Cancer genomics • Disease genetics/genomics

6 Number of Trainees

Eligibility • U.S. citizen or permanent resident status • Holds doctorate degree • Preference will be given to those with a clinical doctorate

Application Deadline: March 4

PROGRAM LEADERSHIP

CURRENT TRAINEES

Current Trainee

Ethan Benevides

FACULTY MENTOR: Barry Byrne, M.D.

RESEARCH PROJECT: Dr. Benevides’s research focuses on the development and testing of novel AAV gene therapy construct for the treatment of Pompe disease. His background in respiratory rehabilitation and neural control of breathing led him to study Pompe disease, a glycogen storage disorder in which both the respiratory and nervous systems are heavily affected. In his current work, he is assessing novel AAV constructs for their ability to effectively treat the neural and respiratory aspects of Pompe disease. His long-term goal is to advance genomic treatments that improve the health and quality of life for individuals with neuromuscular diseases, particularly addressing respiratory dysfunction.

BACKGROUND: Ph.D., University of Florida

Ethan Benevides

CURRENT TRAINEE

Brian Gawronski, Pharm.D., BCPS

FACULTY MENTOR: Julio Duarte, Pharm.D., Ph.D., FAHA
 
RESEARCH PROJECT: “Improving the Implementation of Preemptive Pharmacogenetic Testing with a Focus in Patient Populations Which Are Medically Underserved”

Dr. Gawronski’s current research aims to improve preemptive pharmacogenetic testing implementation, especially in medically underserved populations, with the goal of equitable improvement in individualized medication prescribing. His research seeks to discover patient factors which are predictive of being prescribed drugs with pharmacogenetic guidelines, determine the effect of preemptive pharmacogenetic testing implementation on patient outcomes, and implement quick response (QR) code-based pharmacogenetic reporting methods. This work should lead to advancements in the clinical implementation of preemptive pharmacogenetic testing, leading to the increased utilization of pharmacogenetic results across the healthcare system.
 
BACKGROUND: Pharm.D., University of Florida College of Pharmacy
 

Brian Gawronski

CURRENT TRAINEE

Richard J. Marrero, Pharm.D.

FACULTY MENTOR: Jatinder K. Lamba, PhD, MSc

RESEARCH PROJECT: “Genome-wide Association Study in Children Diagnosed with Acute Myeloid Leukemia”

Dr. Marrero’s research efforts are focused on identifying genetic markers predictive of therapeutic outcome in pediatric cancer patients. Dr. Marrero’s long-term goal is developing algorithms to incorporate pharmacogenomic markers with other prognostic factors to advance precision medicine in oncology.

BACKGROUND: PharmD, Palm Beach Atlantic University, Gregory School of Pharmacy

Richard J. Marrero

CURRENT TRAINEE

Abelardo Montalvo, Pharm.D.

FACULTY MENTOR: Danxin Wang M.D., Ph.D.

RESEARCH PROJECT: “Identification of Functional Regulatory Variants of CYP2C9 in African Americans”

Currently, several genetic biomarkers in CYP2C9 are available but large variation in the expression and activity of CYP2C9 still remains unexplained, especially in African Americans. Dr. Montalvo’s work focuses on the identification and characterization of the novel functional regulatory genetic variants that control the expression of CYP2C9 in African Americans. The long-term goal is to improve existing CYP2C9 genotyping panels for more accurate prediction of CYP2C9 activity. These findings will enhance genotype-guided therapy for warfarin and many other drugs metabolized by CYP2C9 to improve clinical outcomes for all populations. 

BACKGROUND: Pharm.D., University of Florida

Abelardo Montalvo

CURRENT TRAINEE

Nam H. K. Nguyen, Pharm.D., M.S.

FACULTY MENTORS: Jatinder K. Lamba, PhD, MSc and Christopher D. Vulpe, MD, PhD

RESEARCH PROJECT: “The CRISPR Synthetic Lethality Screens Identify Resistant/Sensitive Modulators of Chemotherapy in Acute Myeloid Leukemia (AML)”

Dr. Nguyen’s research is focused on understanding the molecular mechanisms underlying patient responses to both standard chemotherapy and newly approved agents in AML to identify novel pathways and targets to overcome drug resistance. The research’s long-term goal is to apply these findings to uncover new targets and drugs that overcome chemoresistance, as well as to personalize and prioritize treatment in order to improve patient outcomes.

BACKGROUND: PharmD/MS (2019), University of Maryland School of Pharmacy

Nam H. K. Nguyen

CURRENT TRAINEE

Carl Rizk, M.D.

Faculty Mentor: Ali Zarrinpar, M.D., Ph.D.

RESEARCH PROJECT: “Genetic Mechanisms of Hepatic Fibrosis and Liver Cancer: Exploring CEACAM1’s Role in MASH and HCC Progression”

Dr. Rizk’s research investigates the genetic mechanisms driving the development of hepatic fibrosis and hepatocarcinogenesis as well as the role of CEACAM1 glycoprotein and its’ interactions with genes previously implicated in the development of hepatic fibrosis and hepatocellular carcinoma by correlating the genetic variations of CEACAM1 with the severity of hepatic fibrosis and the development of liver cancer in patients with Metabolic dysfunction associated steatohepatitis (MASH).

Dr. Rizk’s will be also focusing on analyzing the effects of polymorphisms in PNPLA3, TM6SF2, HSD17B3, and MBOAT7 on CEACAM1 expression and their roles in the progression from hepatic steatosis to fibrosis as well as exploring the mechanisms through which modulation of CEACAM1 and interaction with insulin resistance affects susceptibility to Hepatocellular carcinoma (HCC) in genetically modified mouse models.

Background: M.D., University of Balamand, Beirut Lebanon

Carl Rizk

HOW TO APPLY

Applicants are encouraged to submit the application materials listed below by March 4.

  • CV
  • Personal statement (In two pages or less, describe your background, interest and experience in genomic medicine and your career goals)
  • Research plan or goals statement (If you are a UF postdoc planning to stay in your current lab, you should describe your primary research project and mentor. If you are not a UF postdoc, please describe which of the three focus areas you are interested in pursuing and the type of project you would like to pursue. Also, please include mentors with whom you would be interested in working.)
  • Three letters of recommendation (mailed by referee to Elizabeth Eddy at the address below)
  • Unofficial transcript (mailed to Elizabeth Eddy at the address below)